Studybox Research

Studybox Research Emergency Use Authorization · Infectious disease

Point-of-Care Instrument-Read SARS-CoV-2 Antigen Test

An instrument-read biosensor immunoassay for SARS-CoV-2 nucleocapsid antigen in direct anterior nasal swabs (no transport media) received Emergency Use Authorization.

Case study

Emergency Use Authorization · Infectious disease

EUA Clinical Study for a Point-of-Care Instrument-Read SARS-CoV-2 Antigen Test

Key facts

Outcome
FDA emergency use authorization
Patients tested
about 400
Symptomatic subjects analyzed
about 100
Sensitivity
about 85%
Specificity
100%
Initial invalid rate
about 4%
Specimen
Direct anterior nasal swab, no transport media
Run by
The Studybox team, as Toolbox Medical Innovations

01 How the study ran

  • Prospective collection of direct nasal swabs from about 400 patients: those suspected of SARS-CoV-2 infection within 6 days of symptom onset, and asymptomatic patients reporting exposure to an individual confirmed with COVID-19.
  • Swabs were collected from both nostrils and tested immediately after collection, without transport media.
  • Comparator: a concurrently collected nasal swab stored in 3 mL viral transport media and tested with an EUA-authorized, high-sensitivity RT-PCR molecular test.
  • Primary analysis of about 100 symptomatic subjects spanning ages 2 to 65+, with cumulative agreement reported by days since symptom onset (day 0 through day 6).
  • Clinical specimens were collected prospectively during the pandemic, as described in the labeling.
  • Invalid results were retested with residual processed sample on a new cartridge, as the instructions for use direct.

02 Takeaways for sponsors

  • A laboratory-only EUA can be extended to point-of-care use. Plan a separate POC clinical evaluation with immediate testing at patient-care sites rather than assuming laboratory data will carry over.
  • Report and power by days since symptom onset. Early-onset cumulative bins with only a couple of dozen positives can swing several points, so sponsors should aim well above the template's minimum of 30 positives.
  • For direct-swab tests, collect a separate same-visit swab in VTM for the comparator and keep the anatomical site identical.
  • Define the retest pathway for invalids in the protocol so the initial and final invalid rates can both be reported.
  • Expect serial-testing conditions. Asymptomatic or screening claims may bring post-authorization study obligations rather than relying on single-test performance.
Full results

Among about 100 symptomatic subjects, sensitivity (PPA) was about 85% and specificity (NPA) was 100%, with a small number of false negatives and no false positives.

Cumulative PPA by days from symptom onset was 100% at day 0, about 90% for days 0-1, about 80% for days 0-2 and 0-3, about 82% for days 0-4 and about 85% for days 0-5 and 0-6. The initial invalid rate for symptomatic subjects was about 4%, and all initial invalids were resolved on retest with residual processed sample.

FDA issued the Emergency Use Authorization for CLIA-certified laboratories meeting the requirements for moderate or high complexity testing. A reissued letter of authorization added use at the point of care under a CLIA Certificate of Waiver, Compliance or Accreditation, and testing of individuals without symptoms. It also added a condition requiring a post-authorization clinical evaluation to support the serial screening claim. The current labeling reflects FDA's repeat-testing framework: twice over three days for symptomatic individuals and three times over five days for those without symptoms, with at least 48 hours between tests.

FDA's antigen template asks for a minimum sensitivity of 80% or more. The roughly 85% point estimate meets it. The template text we reviewed does not set a confidence-interval lower bound for antigen tests, and with about 40 RT-PCR positives the 95% interval is wide. With the template's minimum of 30 positives, the interval is necessarily wide, and adding positives is the only way to narrow it. Specificity of 100% also carries uncertainty: a negative set of this size cannot rule out a false-positive rate of a few percent.

The days-from-onset table should be read as cumulative, not daily. The dip to about 80% in days 0-2 and 0-3 rests on only a couple of dozen positives, so one or two misses move the estimate by several points. The labeling also notes that only symptomatic results are presented, although about 400 patients were tested. That limits what the published data say about asymptomatic performance, which FDA addressed through the post-authorization serial-testing condition rather than single-test accuracy.

The challenge and regulatory background

The test detects SARS-CoV-2 nucleocapsid antigen in direct anterior nasal swabs collected by a healthcare provider, without transport media, and a benchtop biosensor instrument reads the cartridge. The original authorization covered individuals suspected of COVID-19 within the first six days of symptom onset, tested in CLIA-certified laboratories that meet the requirements for moderate or high complexity testing.

Extending the authorization to the point of care, in patient care settings operating under a CLIA Certificate of Waiver, Compliance or Accreditation, required clinical performance data from point-of-care settings. The reissued authorization letter lists updated clinical performance data that include clinical evaluation in POC settings. The evidence therefore had to show acceptable agreement with a high-sensitivity RT-PCR when swabs were collected and tested immediately where patients were seen, stratified by days since symptom onset.

Because the test uses a direct swab with no transport medium, the device swab could not be split. A second swab had to be collected at the same visit for the comparator, and both swabs had to come from the same anatomical site so that sampling differences would not bias agreement.

SARS-CoV-2 antigen tests reached the U.S. market mainly through Emergency Use Authorizations under section 564 of the Federal Food, Drug, and Cosmetic Act. These followed the HHS Secretary's determination of a public health emergency and the declaration that circumstances justified emergency use of COVID-19 diagnostics. An EUA is not a clearance: FDA authorizes use when it is reasonable to believe the product may be effective and its known and potential benefits outweigh its risks. The authorization comes with Conditions of Authorization that can require post-authorization studies and labeling updates.

FDA set out its clinical expectations in a series of downloadable EUA templates, revised several times during 2020 and 2021. The antigen template we reviewed recommends prospective, blinded, randomized clinical agreement studies with at least 30 positive and 30 negative natural clinical samples from the intended-use population, with days since symptom onset recorded for every subject. The comparator should be one of the more sensitive authorized RT-PCR assays using chemical lysis and solid-phase extraction, and a discordant-analysis plan should be fixed in advance. Candidate tests should show a minimum sensitivity of 80% or more for each sample type. For a point-of-care claim, the whole clinical evaluation should run at CLIA-waived sites with four to six non-laboratory-trained operators using only the quick reference instructions, supplemented by blinded near-LoD contrived samples and flex studies.

Serial testing changed what an antigen authorization means. FDA later revised the authorized uses of all authorized SARS-CoV-2 antigen tests to require repeat testing. Tests authorized for symptomatic people are now for use at least twice over three days with at least 48 hours between tests. Tests authorized for asymptomatic people are now for use at least three times over five days. FDA based this on data showing that repeat testing after a negative antigen result increases the chance of an accurate result. Antigen tests are less sensitive than laboratory RT-PCR, so single-test sensitivity near the 80% expectation and strong dependence on days since symptom onset are what make the category hard.

Why the study was designed this way
  • Testing the direct swab immediately after collection matches the authorized workflow and avoids frozen or transported specimens, which FDA's template treats as needing separate fresh-versus-frozen justification.
  • A concurrently collected nasal swab in VTM for the comparator keeps the device and comparator at the same anatomical site and visit. That limits discordance from biological variability, a point FDA's template stresses.
  • Using a high-sensitivity EUA RT-PCR as comparator follows the template's recommendation. It also makes agreement with positives a conservative estimate, because the comparator detects low viral loads that antigen tests miss.
  • Recording days since symptom onset made it possible to report cumulative agreement from day 0 to day 6, which supports the six-day symptomatic claim and shows where sensitivity is weakest.

Regulatory references: FDA Template for Developers of Antigen Tests (SARS-CoV-2 EUA template) · FDA: In Vitro Diagnostics EUAs - Antigen Diagnostic Tests for SARS-CoV-2 (incl. serial testing revisions) · FDA Repeat Testing Revision Letter for SARS-CoV-2 antigen tests (November 1, 2022) · FDA guidance: Policy for Coronavirus Disease-2019 Tests · FDA: In Vitro Diagnostics EUAs (templates and policy)

Study design and results as reported in the FDA-authorized instructions for use and EUA documents. Sponsor and device names withheld. This study was run by the Studybox leadership and clinical team while operating as Toolbox Medical Innovations, the company Studybox grew out of.

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FAQ

01 What sensitivity did FDA expect for a COVID-19 antigen test EUA?

FDA's antigen template recommends that candidate tests show a minimum sensitivity of 80% or more for each sample type, from a prospective study with at least 30 positive and 30 negative natural clinical samples compared against a high-sensitivity authorized RT-PCR.

02 How was this point-of-care antigen test's clinical performance established?

Direct nasal swabs were collected prospectively and tested immediately. Each was compared with a concurrently collected nasal swab in 3 mL viral transport media tested by a high-sensitivity EUA RT-PCR. Among about 100 symptomatic subjects, sensitivity was about 85% and specificity 100%.

03 Was the test originally authorized for point-of-care use?

No. The authorization was limited to moderate- and high-complexity CLIA-certified laboratories. A reissued authorization added use at the point of care, along with testing of individuals without symptoms.

04 What serial testing does the labeling require?

The current labeling calls for testing at least twice over three days for symptomatic individuals and three times over five days for individuals without symptoms, with at least 48 hours between tests, consistent with FDA's repeat-testing revision.

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